This latest division of government complicated the structure of church-state relations. The College of San Fernando remained in Bucareli's jurisdiction and the supply ships provisioning California still sailed out of San Blas, also within the viceroy's command. The new governor, Felipe de Neve, served directly under de Croix who was starting afresh as far as knowledge of the area was concerned, a fact that would necessarily cause delay in rendering decisions.
De Croix was a quick study. He soon came to realize that Fray Junípero Serra had zeal, true religious spirit, prudence in governing the missions and treating with the Indians, as well as solicitude for the general welfare.
At Carmel and Monterey, Serra announced receipt of the faculty to confirm and set a date for the ceremonies - the feast of Sts. Peter and Paul, June 29th. The adults were to be instructed as to the nature of the sacrament and sponsors were to be sought among the soldiers, servants, workmen and Baja California Indians living in the area.
On the morning of June 29th, Serra sung a High Mass, had the doctrina recited and preached on the nature of the sacrament. He carefully explained how he, a simple priest, had been specially empowered to confirm in the absence of a bishop. Then the Presidente proceeded to administer the first confirmations within the limits of the present State of California.
After the ceremonies, he started a new book of records, his Libro de Corfirmaciones, in which he inserted a copy of the decree authorizing him to confirm. Then, in his own hand, Serra entered the facts of each individual, giving the name, age, place of origin and name of sponsor.
Meanwhile, the governor added a "little grain of pepper ... as a condiment" to the occasion by questioning whether the missions were canonically subject to the bishop of Durango or Guadalajara. The suggestion would later blossom into a full blown controversy.